Protein-Protein Interaction, Protein Hub

Confirmation of Organized Modularity in the Yeast Interactome
Bertin N, Simonis N, Dupuy D, Cusick ME, Han JDJ, et al. 
PLoS Biology Vol. 5, No. 6, e153  

-----------------------------------------------------------

Gene Name, Synonyms, SGD ID, Gene Ontology, Molecular Weight, GRAVY, pI

Saccharomyces Genome Database
ftp://ftp.yeastgenome.org/yeast/
downloaded 31/03/08

-----------------------------------------------------------

SwissProt Accession No, Protein Function, Description, Post-Translational Modifications

Swiss-Prot
The UniProt Consortium, The Universal Protein Resource (UniProt). Nucleic Acids Res. 35:D193-D197(2007).
http://au.expasy.org
downloaded 15/05/08

-----------------------------------------------------------

Localization
Huh, et al., Nature 425, 686-691 (2003)


Protein Abundance Data
Ghaemmaghami, et al., Nature 425, 737-741 (2003)


http://yeastgfp.ucsf.edu/allOrfData.txt
downloaded 15/05/08

-----------------------------------------------------------

Protein Complex Data

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
GT Hart, I Lee, EM Marcotte
BMC Bioinformatics. 2007; 8: 236.

Proteome survey reveals modularity of the yeast cell machinery.
Gavin AC, et al.
Nature. 2006 Mar 30;440(7084):631-6.

-----------------------------------------------------------

Gene Expression Data

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
Spellman, P. T., Sherlock, G., Zhang, M. Q., Iyer, V. R., Anders, K., Eisen, M. B., Brown, P. O., Botstein, D. and Futcher, B.
Mol Biol Cell. 1998; 9, 3273Ð3297.

Genomic expression programs in the response of yeast cells to environmental changes
Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., Botstein, D. and Brown, P. O.
Mol Biol Cell. 2000; 11, 4241Ð4257.

-----------------------------------------------------------

Protein Abundance Data

Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B. and Aebersold, R. (2009). Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 138, 795Ð806.