GEOMI
GEOMI is a network visualisation and analysis platform originally developed at National ICT Australia (NICTA). The program and its source code are released under the LGPL licence. For more information, please click here.
The SBI version of GEOMI includes plugins that enable co-visualisation of interaction data with protein characteristics, as described in:
Download GEOMI (SBI version) [zip]
Requires Java, Java Development Kit (JDK) and Java 3D 1.4.
Download GEOMI source code (SBI version) [zip]
GEOMI User Guide [pdf]
XWG Files
The XWG (XML Wilma Graph) file format is used by GEOMI to visualise networks.
The SBI has developed a collection of XWG files, which integrate interactome data with a range of proteomic parameters. Data sources are outlined in the respective README files.
To visualise, move the downloaded files to the data directory in GEOMI. Make sure the directory also contains the WilmaGraph.dtd file.
README
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interactome of Bertin et al. (2007) dataset [PubMed] biggest connected component of the above interactome within the cytoplasm biggest connected component of the above interactome within the mitochondria interactome within the nucleus biggest connected component of the above |