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Erce MA, Pang CNI, Hart-Smith G, Wilkins MR (2011). The methylproteome and the intracellular methylation network. Proteomics, in press. Kaakoush NO, Deshpande NP, Wilkins MR, Raftery MJ, Janitz K, Mitchell H (2011). Comparative analyses of Campylobacter concisus strains reveal the genome of the reference strain BAA-1457 is not representative of the species. Gut Pathogens, 3: 15. [read article] Campbell MP, Hayes CA, Wilkins MR, Aoki-Kinoshita KF, Harvey DJ, Rudd PM, Kolarich D, Lisacek F, Karlsson NG, Packer NH (2011) UniCarbKB: putting the pieces together for glycomics research. Proteomics, 11: 4117-21. [abstract] Li SS, Xu K, Wilkins MR (2011). Visualisation and analysis of the complexome network of Saccharomyces cerevisiae. Journal of Proteome Research, 10: 4744-56. [abstract] [download software] Deshpande NP, Kaakoush NO, Mitchell H, Janitz K, Raftery MJ, Li SS, Wilkins MR (2011). Sequencing and validation of the Campylobacter concisus genome reveals extensive intra-species diversity. PLoS ONE, 6: e22170. [abstract] Goel A, Li SS, Wilkins MR (2011). Four-dimensional visualisation and analysis of protein-protein interaction networks. Proteomics, 11: 2672-82. [abstract] [download software] Couttas TA, Raftery K, Erce MA, Wilkins MR (2011). Monitoring cytoplasmic protein complexes with blue native gel electrophoresis and stable isotope labelling with amino acids in cell culture: analysis of changes in the 20S proteasome. Electrophoresis, 32: 1819-23. [abstract] Twine NA, Janitz K, Wilkins MR, Janitz M (2011). Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease. PLoS ONE, 6: e16266. [read article] |
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Erce MA, Low JKK, Wilkins MR (2010). Analysis of the RNA degradosome complex in Vibrio angustum S14. FEBS Journal, 277: 5161-73. [abstract] Joshi HJ, von der Leith CW, Packer NH, Wilkins MR (2010). GlycoViewer: a tool for visual summary and comparative analysis of the glycome. Nucleic Acids Research, 38: W667-W670. [read article] [access software] Fung DC, Wilkins MR, Hart D, Hong SH (2010). Using the clustered circular layout as an informative method for visualizing protein-protein interaction networks. Proteomics, 10: 2723-7. [abstract] Kaakoush NO, Man SM, Lamb S, Raftery MJ, Wilkins MR, Kovach Z, Mitchell H (2010). The secretome of Campylobacter concisus. FEBS Journal, 277: 1606-17. [abstract] Pang CN, Gasteiger E, Wilkins MR (2010). Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications. BMC Genomics, 11: 92. [abstract] Okoli AS, Wilkins MR, Raftery MJ, Mendz GL (2010). Response of Helicobacter hepaticus to bovine bile. Journal of Proteome Research, 9: 1374-84. [abstract] Ma L, Pang CN, Li SS, Wilkins MR (2010). Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance. Journal of Proteome Research, 9: 1218-25. [abstract] |
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Widjaja YY, Pang CN, Li SS, Wilkins MR, Lambert TD (2009). The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3D cell. Proteomics, 9: 5309-315. [abstract] [download software] Featured on the cover of Proteomics [see cover].
Wilkins MR (2009). Proteomics data mining. Expert Review of Proteomics, 6: 599-603. [abstract] Wilkins MR (2009). Hares and tortoises: the high versus low throughput proteomic race. Electrophoresis, 30: S150-155. [abstract] Erce MA, Low JKK, March PE, Wilkins MR, Takayama KM (2009). Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners. BBA Proteins and Proteomics, 1794: 1107-1114. [abstract] Huang K-Y, Filarsky M, Padula MP, Raftery MJ, Herbert BR, Wilkins MR (2009). Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis. Proteomics, 9: 2494-2502. [abstract] Little PFR, Williams RB, Wilkins MR (2009). Inter-individual variation in expression: a missing link in biomarker biology? Trends in Biotechnology, 27: 5-10. [abstract] |
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Fung DCY (2008). Modeling and Analyzing Gene Co-Expression in Hepatocellular Carcinoma Using Actor-Semiotic Networks and Centrality Signatures. Cancer Informatics, 6: 463-474. [abstract] Krycer JR, Pang CN, Wilkins MR (2008). High throughput protein-protein interaction data: clues for the architecture of protein complexes. Proteome Science, 6: 32. [abstract] Deshpande N, Wilkins MR, Packer NH, Nevalainen H (2008). Protein glycosylation pathways in filamentous fungi. Glycobiology, 18: 626-637. [abstract] Couttas TA, Raftery MJ, Bernardini G, Wilkins MR (2008). Immonium ion scanning for the discovery of post-translational modifications and its application to histones. Journal of Proteome Research, 7: 2632-2641. [abstract] Wilkins MR, Kummerfeld SK (2008). Sticking together? Falling Apart? Exploring the dynamics of the interactome. Trends in Biochemical Sciences, 33: 195-200. [abstract] Pang CN, Krycer JR, Lek A, Wilkins MR (2008). Are protein complexes composed of core, module and attachment proteins? Proteomics, 3: 425-434. [abstract] Ho E, Webber R, Wilkins MR (2008). Interactive three-dimensional visualization and contextual analysis of protein interaction networks. Journal of Proteome Research, 7: 104-112. [abstract] [download software] |
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Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H (2007). The Minimum Information About a Proteomics Experiment (MIAPE). Nature Biotechnology, 25: 887-893. [abstract] Hsu W-T, Pang CN, Sheetal J, Wilkins MR (2007). Protein-protein interactions and disease: use of S. cerevisiae as a model system. BBA Proteins and Proteomics, 1774: 838-847. [abstract] Pang CN, Hayen A, Wilkins MR (2007). Surface accessibility of post-translational modifications. Journal of Proteome Research, 6: 1833-1845. [abstract] |
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Ho E, Hayen A, Wilkins MR (2006). Characterisation of organellar proteomes: a guide to subcellular proteomic fractionation and analysis. Journal of Proteome Research, 6: 5746-5757. [abstract] Featured in Journal of Proteome Research "Currents" article [download].
Wilkins MR, Appel RD, Van Eyk JE, Chung MCM, Görg A, Hecker MA, Huber LA, Langen H, Link AJ, Paik YK, Patterson SD, Pennington SR, Rabilloud T, Simpson RJ, Weiss W, Dunn MJ (2006). Guidelines for the next 10 years of proteomics. Proteomics, 6: 4-8. [abstract] |
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Hunt SMN, Thomas MR, Sebastian LT, Pedersen SK, Harcourt RL, Sloane AJ, Wilkins MR (2005). Optimal replication and the importance of experimental design for gel-based quantitative proteomics. Journal of Proteome Research, 4: 809-819. [abstract] Featured in Journal of Proteome Research "Research Profile" article [download].
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Arthur JW and Wilkins MR (2004). Using proteomics to mine genome sequences. Journal of Proteome Research, 3:393-402. [abstract] |
Wilkins MR, Appel RD, Williams KL, Hochstrasser DF eds. (2007). Proteome Research: concepts, technology and application. Springer. [info]
Fung DCY, Lo A, Jankova L, Clarke SJ, Malloy M, Robertson GR, Wilkins MR (2011). Classification of cancer patients using pathway analysis and network clustering. In: G. Cagney and A. Emili (Eds.), Methods in Molecular Biology, 781: 311-36. [abstract]
Bek EJ and Wilkins MR (2008). Using Yeast to Study Protein-Protein Interactions Relevant to Disease. In: S. Witt (Ed), Yeast as a model for Human Disease, pp 145-176. Signpost Research Press. [info]
Pang CN and Wilkins MR (2008). Online resources for the molecular contextualization of disease. In: Methods in Molecular Medicine, 141: 287-308. [abstract]
Wilkins MR (2007). Biomarker identification: the role of experimental design, statistics and data sharing. In: J. Van Eyk and M. Dunn (Eds.), Clinical Proteomics: from Diagnosis to Therapy, pp 113-120. Wiley-VCH. [info]
Wilkins MR and Appel RD (2007). Ten years of the proteome. In: M.R. Wilkins, R.D. Appel, K.L. Williams and D.F. Hochstrasser (Eds.), Proteome Research: concepts, technology and application, pp 1-14. Springer. [info]
Packer N, Gooley AA and Wilkins MR (2007). One gene, many proteins. In: M.R. Wilkins, R.D. Appel, K.L. Williams and D.F. Hochstrasser (Eds.), Proteome Research: concepts, technology and application, pp 95-122. Springer. [info]
Hernandez P, Binz P.-A. and Wilkins MR (2007). Protein Identification in Proteomics. In: M.R. Wilkins, R.D. Appel, K.L. Williams and D.F. Hochstrasser (Eds.), Proteome Research: concepts, technology and application, pp 41-68. Springer. [info]
Wilkins MR and Hunt SM (2006). Bioinformatics and experimental design for biomarker discovery. In: V. Thongboonkerd (Ed.), Proteomics of Human Body Fluids: Principles, Methods, and Applications, pp 147-174. Humana Press. [info]
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD and Bairoch A (2005). Protein Identification and Analysis Tools on the ExPASy Server. In: J.M. Walker (Ed.), The Proteomics Protocols Handbook, 2nd Edition, pp 571-607. Humana Press. [info]
Herbert BR, Pedersen S, Harry JL, Sebastian L, Grinyer J, Traini M, McCarthy J, Wilkins MR, Gooley AA, Righetti PG, Packer NH and Williams KL (2003). Mastering proteome complexity using two-dimensional gel electrophoresis. PharmaGenomics September 2003, pp 22-36.
Cooper CA, Joshi HJ, Harrison MJ, Wilkins MR and Packer NP (2003). Querying GlycosuiteDB. In: P.M. Conn (Ed.), Handbook of Proteomic Methods, pp 233-240. Humana Press. [info]
Recent Conferences
- 9th HUPO World Congress
September 2010, Sydney, Australia [news article] - 10th Annual Conference of the Australasian Microarray & Associated Technologies Association (AMATA)
September 2010, Hobart, Australia - Lowy Symposium: Discovering Cancer Therapeutics
May 2010, Sydney, Australia - 31st Annual Lorne Genome Conference
February 2010, Lorne, Australia - 9th Annual Conference of the Australasian Microarray & Associated Technologies Association (AMATA)
November 2009, Katoomba, Australia - 8th Australian Peptide Conference
October 2009, South Stradbroke Island, Australia - 14th Annual Proteomics Symposium
February 2009, Lorne, Australia - 19th International Conference on Genome Informatics (GIW)
December 2008, Gold Coast, Australia - 5th Structural Biology & Functional Genomics Conference
December 2008, Singapore - 20th International Congress of Clinical Chemistry & Laboratory Medicine (IFCC-WorldLab)
September 2008, Forteleza, Brazil - 1st Annual Protein and Peptide Conference (PepCon)
April 2008, Shenzhen, China
Invited Presentations
- UNSW Analytical Centre Research Meeting, University of New South Wales (March 2010)
- Adelaide Protein Group Half-Day Conference, Adelaide (December 2009)
- Australasian Yeast Group Products and Discovery Conference (YPD09), Adelaide (December 2009)
- Australian Wine Research Institute & Bioplatforms Australia Wine Yeast Systems Biology Workshop, Adelaide (May and November 2009)
- 8th HUPO World Congress [Plenary Speech, International Proteomics Forum], Toronto, Canada (September 2009)
- Geneva University and the Swiss Institute of Bioinformatics, Switzerland (September 2009)
- 18th International Mass Spectrometry Conference [Invited Keynote], Bremen, Germany (August 2009)
- 57th Annual Meeting of The Cardiac Society of Australia and New Zealand, Sydney (August 2009)
- Faculty of Medicine, University of Western Sydney (June 2009)
- Ramaciotti Centre Next Generation Sequencing Launch, University of New South Wales (June 2009)
- 2009 ANDS-ARCS Supporting the Data Lifecycle Symposium, University of Sydney (February 2009)
- 2008 NSW Bioinformatics Research Symposium, University of Sydney (December 2008)
- The Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney
- The John Curtin Medical School, Australian National University, Canberra
- The Diabetes Transplant Unit, Prince of Wales Hospital, Randwick